Waldir Leoncio
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5449bef162
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Fixed output
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2024-09-27 13:01:32 +02:00 |
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Waldir Leoncio
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dd6ee912bd
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Syntax fixes
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2024-09-27 13:01:30 +02:00 |
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Waldir Leoncio
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9e554d5d4b
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Aligned processing of Genepop with MATLAB code
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2024-09-13 13:53:01 +02:00 |
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Waldir Leoncio
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31575a5b9e
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Dropped support for GenePop on importFile()
File should be handled by `process_GenePop_data()`, as per original BAPS.
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2024-09-13 13:52:39 +02:00 |
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Waldir Leoncio
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00605016d6
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Added process_GenePop_data()
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2024-09-13 13:51:25 +02:00 |
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Waldir Leoncio
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036ec00bbd
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Fixed addAlleles()
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2024-09-13 13:39:24 +02:00 |
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Waldir Leoncio
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9e3ea49398
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handleData defaults to BAPS format
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2024-09-13 12:42:46 +02:00 |
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Waldir Leoncio
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99e272a80f
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Ensure diffInCounts returns as.matrix (#24)
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2024-08-26 06:09:27 +02:00 |
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Waldir Leoncio
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471c380ce3
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Improved conversion from FASTA to BAPS (#24)
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2024-08-09 15:33:03 +02:00 |
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Waldir Leoncio
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ca358ff0fb
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Improved handling of FASTA data (#24)
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2024-08-09 14:57:07 +02:00 |
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Waldir Leoncio
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73b0a70138
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process_BAPS_data() can handle file being an R object
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2024-08-09 13:55:55 +02:00 |
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Waldir Leoncio
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7b7968f00b
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Added function to convert from FASTA to BAPS (#24)
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2024-08-09 13:55:04 +02:00 |
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Waldir Leoncio
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6e08c35f13
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Unwrapped `greedyMix() example (#24)
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2024-08-07 11:42:29 +02:00 |
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Waldir Leoncio
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e873075ebf
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Fixed greedyMix() for BAPS files (#24) 🍾
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2024-07-02 16:39:38 +02:00 |
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Waldir Leoncio
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6aecf38231
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Fixed indMix() and subfunctions (#24)
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2024-07-02 16:31:17 +02:00 |
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Waldir Leoncio
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320bb28a7a
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Fixed docs
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2024-06-26 14:27:02 +02:00 |
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Waldir Leoncio
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99f28ba215
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Renamed global environment, fixed assignments (#24)
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2024-04-11 09:47:29 +02:00 |
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Waldir Leoncio
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ec959fcfb2
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Fixes to laskeMuutokset() (#24)
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2024-04-10 16:07:00 +02:00 |
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Waldir Leoncio
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d1e567c326
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Syntax fix to indMix() (#24)
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2024-04-10 16:07:00 +02:00 |
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Waldir Leoncio
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55a36e81ae
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Retranslated computeDiffInCounts() (#24)
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2024-04-10 16:07:00 +02:00 |
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Waldir Leoncio
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c3b8da0012
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Changed default npops to 3 (#24)
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2024-04-10 16:06:59 +02:00 |
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Waldir Leoncio
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58a5e5a2fd
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laskeMuutokset() reads npop from parent functions (#24)
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2024-04-10 16:06:58 +02:00 |
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Waldir Leoncio
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5deadcf3ee
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Using a dedicated environment for globals (#24)
Based on suggestion from <https://stackoverflow.com/a/12605694/1169233>.
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2024-04-10 16:06:58 +02:00 |
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Waldir Leoncio
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55d302ab67
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Retranslated computePopulationLogml() (#24)
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2024-04-10 16:06:58 +02:00 |
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Waldir Leoncio
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f5c09094b0
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Skips greedyMix() example until #24 is fixed
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2024-04-08 13:34:14 +02:00 |
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Waldir Leoncio
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f676042a17
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Updated documentation (#24)
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2024-04-08 13:29:03 +02:00 |
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Waldir Leoncio
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6209bb33fa
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Fails for FAST input to greedyMix() (#24)
This is a desirable feature, but was not implemented in the original BAPS, so better leave it out until the original planned features is working.
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2024-04-08 13:14:54 +02:00 |
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Waldir Leoncio
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6c3e2aff04
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Fixed calculation og ninds (#24)
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2024-04-08 10:11:25 +02:00 |
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Waldir Leoncio
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5c35b9ad1e
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Bugfixes to indMix() and subfunctions (#24)
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2024-03-25 16:10:44 +01:00 |
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Waldir Leoncio
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26ab0107a8
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Improved handling of BAPS format (#24)
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2024-03-25 16:10:43 +01:00 |
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Waldir Leoncio
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f361975254
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Fixed calculation of ninds ekat (#24)
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2024-03-25 16:10:43 +01:00 |
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Waldir Leoncio
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530442487f
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Added processing of BAPS format
To be eventually dropped, but useful for comparing output with MATLAB code.
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2024-03-25 16:10:41 +01:00 |
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Waldir Leoncio
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273edafd30
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Improved output of writeMixtureInfo()
Also, incremented version number to 0.0.0.9024
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2023-09-14 12:52:30 +02:00 |
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Waldir Leoncio
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63af25a63d
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Auto-recognizing format of greedyMix() data
Works as long as there's only one period in the file path
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2023-09-14 11:11:37 +02:00 |
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Waldir Leoncio
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a73752364b
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Fixed output of greedyMix()
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2023-09-14 11:02:06 +02:00 |
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Waldir Leoncio
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ceaf7eca4b
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Added verbose argument to writeMixtureInfo()
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2023-09-11 14:06:45 +02:00 |
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Waldir Leoncio
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2b756576ac
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Fixed sink() usage
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2023-09-11 13:14:08 +02:00 |
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Waldir Leoncio
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70ec460106
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Fixed docs
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2023-09-11 13:13:55 +02:00 |
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Waldir Leoncio
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882fcd4112
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Exporting importFile()
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2023-09-11 12:51:41 +02:00 |
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Waldir Leoncio
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3e4044bcec
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Improved handling of supported formats for greedyMix() (#25)
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2023-09-11 12:49:21 +02:00 |
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Waldir Leoncio
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76828387a3
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Fixed basic parsing of FASTA files (#25)
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2023-09-11 12:15:30 +02:00 |
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Waldir Leoncio
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cfb71bfd6d
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Fixed syntax (#25)
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2023-08-11 16:23:02 +02:00 |
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Waldir Leoncio
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44e418f838
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Improved printing (#25)
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2023-08-11 16:22:45 +02:00 |
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Waldir Leoncio
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177685b6a2
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Partial reversion of b034158 (#25)
It should be OK for Z to be NULL. This currently triggers an issue on initialCounts(), which should be fixed
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2023-08-11 16:22:29 +02:00 |
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Waldir Leoncio
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372891fbe1
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Fixed to indMix (#25)
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2023-08-11 14:31:08 +02:00 |
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Waldir Leoncio
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3537f18d2c
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Incorporated handleData() on greedyMix() (#25)
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2023-08-11 11:18:03 +02:00 |
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Waldir Leoncio
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f47e13d3a9
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Improved handleData() to handle FASTA (#25)
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2023-08-11 11:13:24 +02:00 |
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Waldir Leoncio
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95d9d658cb
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Added numeric output option to load_fasta() (#25)
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2023-08-11 11:01:20 +02:00 |
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Waldir Leoncio
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bd932e2b6d
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Added missing documentation for arguments (#25)
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2023-08-09 15:27:45 +02:00 |
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Waldir Leoncio
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85c8c01816
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Syntax fix (#25)
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2023-08-09 15:11:54 +02:00 |
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