Commit graph

302 commits

Author SHA1 Message Date
Waldir Leoncio
a8cae95c82 Added tests, fixed subfunctions (#3) 2023-02-10 15:11:54 +01:00
Waldir Leoncio
3cfbe5bfe8 fixup! Translated testFastaData() (#3) 2023-02-07 10:37:00 +01:00
Waldir Leoncio
45a41a9faa Fixed log2() on getPopDistancesByKL() 2023-02-01 13:46:58 +01:00
Waldir Leoncio
257046dc5f Fixed synxtax of zeallot call (#3) 2023-01-23 11:22:01 +01:00
Waldir Leoncio
8ce9f3af04 Translated testFastaData() (#3) 2023-01-23 11:21:16 +01:00
Waldir Leoncio
3a479d1232 Making it clear which package log2() is coming from (#3) 2022-12-23 14:14:27 +01:00
Waldir Leoncio
98cde6b23e Translated dec2bitv() (#3) 2022-12-23 13:42:05 +01:00
Waldir Leoncio
ce53f1f45d Translated ind2subv() (#3) 2022-12-23 13:11:55 +01:00
Waldir Leoncio
547bb7309c Translated minimum_spanning_tree() (#3) 2022-12-23 10:45:50 +01:00
Waldir Leoncio
0048a4e5fd Added placeholder for ind2subv() 2022-12-22 15:06:04 +01:00
Waldir Leoncio
b6afea85e1 Translated myisvector() 2022-12-22 15:06:04 +01:00
Waldir Leoncio
6f8e1a51a2 Translated mysize() 2022-12-22 15:06:04 +01:00
Waldir Leoncio
6a81eb9d2c Translated argmin() 2022-12-22 15:06:04 +01:00
Waldir Leoncio
c69c0639ae Translated elim_order() 2022-12-22 15:06:04 +01:00
Waldir Leoncio
aff5b3de15 Added more functions to translate 2022-12-22 15:06:04 +01:00
Waldir Leoncio
ac1e73c6fa Translated cliques_to_jtree() 2022-12-22 15:06:04 +01:00
Waldir Leoncio
76d31e593a Translated setdiag() 2022-12-22 13:43:36 +01:00
Waldir Leoncio
f2f59ba7f8 Translated myunion() 2022-12-22 13:36:07 +01:00
Waldir Leoncio
a757a4435c Translated mysubset() 2022-12-22 13:31:41 +01:00
Waldir Leoncio
73438af7bb Removed translating TODOs
Replaced with built-in TODO list in Issue #3's body
2022-12-22 13:29:54 +01:00
Waldir Leoncio
bc5bb61f52 Added placeholder for mysubset() 2022-12-22 13:18:54 +01:00
Waldir Leoncio
d4c11a89af Translated neighbors() 2022-12-22 13:12:44 +01:00
Waldir Leoncio
eabfd2efea Translated triangulate() 2022-12-22 11:57:32 +01:00
Waldir Leoncio
17019a9c94 Added commented-out original code to still-empty functions 2022-12-22 11:57:18 +01:00
Waldir Leoncio
e60e40b21c Translated myintersect() 2022-12-22 10:41:26 +01:00
Waldir Leoncio
e094a8d317 Workaround for variable scope check note
Read https://github.com/r-lib/zeallot/issues/57 for more details
2022-12-22 10:00:21 +01:00
Waldir Leoncio
17a5ff66d6 Translated findCliques() + subfunctions 2022-12-22 08:59:48 +01:00
Waldir Leoncio
80ddbbdd00 Importing zeallot package
Its unpacking operator, %<-%, looks very promising for DRYing the codebase, which uses lots of multiple assignments.
2022-12-21 14:40:12 +01:00
Waldir Leoncio
8f167f2e43 Translated laskeKlitik()
Also, added placeholder for subfunction findCliques()
2022-12-21 14:27:29 +01:00
Waldir Leoncio
85c412f347 Translated testaaKoordinaatit() (#3) 2022-11-16 11:56:21 +01:00
Waldir Leoncio
53bae46397 Translated checkLogml() (#3) 2022-09-15 13:02:32 +02:00
Waldir Leoncio
46dc08905a Translated laskemuutokset{1-5}() (#3) 2022-09-15 12:47:22 +02:00
Waldir Leoncio
3efb54d8b5 Refactored remaining laskeMuutokset as R6 methods 2022-08-25 13:48:17 +02:00
Waldir Leoncio
c05a500d5f Translated laskeVarmuus (#3) 2022-08-25 13:03:36 +02:00
Waldir Leoncio
1667682c5e Refactored laskeMuutokset4() as an R6 method 2022-08-25 12:54:55 +02:00
Waldir Leoncio
835ac7e6b9 Fixed several linting issues 2022-07-28 15:47:36 +02:00
Waldir Leoncio
86a5dda6d6 Translated mysetdiff() (#3) 2022-07-28 14:43:04 +02:00
Waldir Leoncio
84e0eb61d8 Translated computeDiffInCliqCounts() (#3) 2022-07-28 14:23:35 +02:00
Waldir Leoncio
31ab81a215 Translated computeCounts() (#3) 2022-07-28 11:16:59 +02:00
Waldir Leoncio
ea0190b874 Syntax fixes, added documentation 2022-07-19 14:34:08 +02:00
Waldir Leoncio
8f3193e59b Translated greedyPopMix() (#2) 2022-07-19 13:47:15 +02:00
Waldir Leoncio
87f4ffb8d4 Translated waitALittle() 2022-07-19 13:47:15 +02:00
Waldir Leoncio
4e8c3021e0 Added diff translation of greedyPopMix() (#2) 2022-07-19 13:47:12 +02:00
Waldir Leoncio
f0d4858149 Translated writeMixtureInfoPop() (#2) 2022-05-19 15:07:53 +02:00
Waldir Leoncio
26e2a48c97 Moved original MATLAB code to package 2022-05-13 13:38:35 +02:00
Waldir Leoncio
a469240f81 Replaced some syntax
Replaced translated code with equivalent code from `lueGenePopData()`
2022-05-13 12:41:19 +02:00
Waldir Leoncio
1cc0fba114 Added function documentation 2022-05-13 12:40:34 +02:00
Waldir Leoncio
fff8574b82 Translated lueGenePopDataPop() (#2) 2022-05-13 11:22:31 +02:00
Waldir Leoncio
55b3362c58 Fixed minor check notes 2022-05-13 11:22:18 +02:00
Waldir Leoncio
03db7f4124 Translated handlePopData (#2) 2022-04-13 09:12:59 +02:00