Waldir Leoncio
b57bc3f299
Added logml tests for #24
2024-09-27 13:22:40 +02:00
Waldir Leoncio
99ec89fd85
Fixed calculation of distances
2024-09-27 13:18:10 +02:00
Waldir Leoncio
4b0448d05e
Fixed calculation of logml
2024-09-27 13:01:32 +02:00
Waldir Leoncio
f70bc93630
Adjusted unit tests
2024-09-27 13:01:32 +02:00
Waldir Leoncio
5449bef162
Fixed output
2024-09-27 13:01:32 +02:00
Waldir Leoncio
dd6ee912bd
Syntax fixes
2024-09-27 13:01:30 +02:00
Waldir Leoncio
aa675d1804
Updated docs
2024-09-13 14:23:11 +02:00
Waldir Leoncio
b4fe834822
Temp-wrapping disfunctional code
2024-09-13 14:19:25 +02:00
Waldir Leoncio
822521af9b
Merge branch 'process-genepop' into issue-24
2024-09-13 13:53:12 +02:00
Waldir Leoncio
9e554d5d4b
Aligned processing of Genepop with MATLAB code
2024-09-13 13:53:01 +02:00
Waldir Leoncio
31575a5b9e
Dropped support for GenePop on importFile()
...
File should be handled by `process_GenePop_data()`, as per original BAPS.
2024-09-13 13:52:39 +02:00
Waldir Leoncio
00605016d6
Added process_GenePop_data()
2024-09-13 13:51:25 +02:00
Waldir Leoncio
036ec00bbd
Fixed addAlleles()
2024-09-13 13:39:24 +02:00
Waldir Leoncio
9e3ea49398
handleData defaults to BAPS format
2024-09-13 12:42:46 +02:00
Waldir Leoncio
54b0b081ea
Added unit tests for greedyMix() on GenePop ( #24 )
2024-08-26 13:26:52 +02:00
Waldir Leoncio
12884cfcb6
Added GenePop data, txt and gen ( #24 )
2024-08-26 13:26:07 +02:00
Waldir Leoncio
fa7e750c69
Merge branch 'fix-ci' into develop
2024-08-26 10:15:36 +02:00
Waldir Leoncio
9ab4dfb29f
Updated actions/checkout to v4
2024-08-26 06:53:55 +02:00
Waldir Leoncio
010f18dd19
Merge branch 'issue-24' into develop
...
* issue-24:
Increment version number to 0.0.0.9029
Disabled FASTA tests on greedyMix() (#24 )
Added synthetic FASTA file (#24 )
Ensure diffInCounts returns as.matrix (#24 )
Adapted tests to FASTA on greedyMix() (#24 )
Removed baps file pointing to fasta
Improved conversion from FASTA to BAPS (#24 )
Improved handling of FASTA data (#24 )
`process_BAPS_data()` can handle file being an R object
Added function to convert from FASTA to BAPS (#24 )
Unwrapped `greedyMix() example (#24 )
2024-08-26 06:32:51 +02:00
Waldir Leoncio
d925545e70
Increment version number to 0.0.0.9029
2024-08-26 06:30:56 +02:00
Waldir Leoncio
9ff5f39c39
Disabled FASTA tests on greedyMix() ( #24 )
2024-08-26 06:30:49 +02:00
Waldir Leoncio
6f70f6f752
Added synthetic FASTA file ( #24 )
2024-08-26 06:10:07 +02:00
Waldir Leoncio
99e272a80f
Ensure diffInCounts returns as.matrix ( #24 )
2024-08-26 06:09:27 +02:00
Waldir Leoncio
b7282d67df
Adapted tests to FASTA on greedyMix() ( #24 )
2024-08-19 13:32:05 +02:00
Waldir Leoncio
43886d649f
Removed baps file pointing to fasta
2024-08-19 13:29:18 +02:00
Waldir Leoncio
471c380ce3
Improved conversion from FASTA to BAPS ( #24 )
2024-08-09 15:33:03 +02:00
Waldir Leoncio
ca358ff0fb
Improved handling of FASTA data ( #24 )
2024-08-09 14:57:07 +02:00
Waldir Leoncio
73b0a70138
process_BAPS_data() can handle file being an R object
2024-08-09 13:55:55 +02:00
Waldir Leoncio
7b7968f00b
Added function to convert from FASTA to BAPS ( #24 )
2024-08-09 13:55:04 +02:00
Waldir Leoncio
6e08c35f13
Unwrapped `greedyMix() example ( #24 )
2024-08-07 11:42:29 +02:00
Waldir Leoncio
5cc111f0c1
Merge branch 'issue-24' into develop
...
* issue-24:
Increment version number to 0.0.0.9028
Updated docs
Added unit tests (#24 )
Fixed `greedyMix()` for BAPS files (#24 ) 🍾
Fixed `indMix()` and subfunctions (#24 )
Fixed tests (#24 )
2024-07-02 16:54:33 +02:00
Waldir Leoncio
d861ffb551
Increment version number to 0.0.0.9028
2024-07-02 16:53:10 +02:00
Waldir Leoncio
3ce6659120
Updated docs
2024-07-02 16:53:04 +02:00
Waldir Leoncio
95ff2378b1
Added unit tests ( #24 )
2024-07-02 16:39:48 +02:00
Waldir Leoncio
e873075ebf
Fixed greedyMix() for BAPS files ( #24 ) 🍾
2024-07-02 16:39:38 +02:00
Waldir Leoncio
6aecf38231
Fixed indMix() and subfunctions ( #24 )
2024-07-02 16:31:17 +02:00
Waldir Leoncio
e4af251307
Fixed tests ( #24 )
2024-07-02 11:23:22 +02:00
Waldir Leoncio
dd025e48c9
Merge branch 'issue-24' into develop
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* issue-24:
Increment version number to 0.0.0.9027
Fixed docs
2024-06-26 14:29:35 +02:00
Waldir Leoncio
00ecfa4fd8
Increment version number to 0.0.0.9027
2024-06-26 14:29:25 +02:00
Waldir Leoncio
320bb28a7a
Fixed docs
2024-06-26 14:27:02 +02:00
Waldir Leoncio
2d5d93adbc
Merge branch 'issue-24' into develop
...
* issue-24:
Increment version number to 0.0.0.9026
Added (commented) test for BAPS data (#24 )
Renamed global environment, fixed assignments (#24 )
Fixes to `laskeMuutokset()` (#24 )
Syntax fix to `indMix()` (#24 )
Retranslated `computeDiffInCounts()` (#24 )
Changed default `npops` to 3 (#24 )
`laskeMuutokset()` reads `npop` from parent functions (#24 )
Using a dedicated environment for globals (#24 )
Retranslated `computePopulationLogml()` (#24 )
Added/renamed BAPS example data (#24 )
2024-04-11 09:49:00 +02:00
Waldir Leoncio
e615bb8b50
Increment version number to 0.0.0.9026
2024-04-11 09:47:49 +02:00
Waldir Leoncio
2a815f15cd
Added (commented) test for BAPS data ( #24 )
2024-04-11 09:47:30 +02:00
Waldir Leoncio
99f28ba215
Renamed global environment, fixed assignments ( #24 )
2024-04-11 09:47:29 +02:00
Waldir Leoncio
ec959fcfb2
Fixes to laskeMuutokset() ( #24 )
2024-04-10 16:07:00 +02:00
Waldir Leoncio
d1e567c326
Syntax fix to indMix() ( #24 )
2024-04-10 16:07:00 +02:00
Waldir Leoncio
55a36e81ae
Retranslated computeDiffInCounts() ( #24 )
2024-04-10 16:07:00 +02:00
Waldir Leoncio
c3b8da0012
Changed default npops to 3 ( #24 )
2024-04-10 16:06:59 +02:00
Waldir Leoncio
58a5e5a2fd
laskeMuutokset() reads npop from parent functions (#24 )
2024-04-10 16:06:58 +02:00
Waldir Leoncio
5deadcf3ee
Using a dedicated environment for globals ( #24 )
...
Based on suggestion from <https://stackoverflow.com/a/12605694/1169233 >.
2024-04-10 16:06:58 +02:00
