Waldir Leoncio
|
e873075ebf
|
Fixed greedyMix() for BAPS files (#24) 🍾
|
2024-07-02 16:39:38 +02:00 |
|
Waldir Leoncio
|
6aecf38231
|
Fixed indMix() and subfunctions (#24)
|
2024-07-02 16:31:17 +02:00 |
|
Waldir Leoncio
|
320bb28a7a
|
Fixed docs
|
2024-06-26 14:27:02 +02:00 |
|
Waldir Leoncio
|
99f28ba215
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
Waldir Leoncio
|
ec959fcfb2
|
Fixes to laskeMuutokset() (#24)
|
2024-04-10 16:07:00 +02:00 |
|
Waldir Leoncio
|
d1e567c326
|
Syntax fix to indMix() (#24)
|
2024-04-10 16:07:00 +02:00 |
|
Waldir Leoncio
|
55a36e81ae
|
Retranslated computeDiffInCounts() (#24)
|
2024-04-10 16:07:00 +02:00 |
|
Waldir Leoncio
|
c3b8da0012
|
Changed default npops to 3 (#24)
|
2024-04-10 16:06:59 +02:00 |
|
Waldir Leoncio
|
58a5e5a2fd
|
laskeMuutokset() reads npop from parent functions (#24)
|
2024-04-10 16:06:58 +02:00 |
|
Waldir Leoncio
|
5deadcf3ee
|
Using a dedicated environment for globals (#24)
Based on suggestion from <https://stackoverflow.com/a/12605694/1169233>.
|
2024-04-10 16:06:58 +02:00 |
|
Waldir Leoncio
|
55d302ab67
|
Retranslated computePopulationLogml() (#24)
|
2024-04-10 16:06:58 +02:00 |
|
Waldir Leoncio
|
f5c09094b0
|
Skips greedyMix() example until #24 is fixed
|
2024-04-08 13:34:14 +02:00 |
|
Waldir Leoncio
|
f676042a17
|
Updated documentation (#24)
|
2024-04-08 13:29:03 +02:00 |
|
Waldir Leoncio
|
6209bb33fa
|
Fails for FAST input to greedyMix() (#24)
This is a desirable feature, but was not implemented in the original BAPS, so better leave it out until the original planned features is working.
|
2024-04-08 13:14:54 +02:00 |
|
Waldir Leoncio
|
6c3e2aff04
|
Fixed calculation og ninds (#24)
|
2024-04-08 10:11:25 +02:00 |
|
Waldir Leoncio
|
5c35b9ad1e
|
Bugfixes to indMix() and subfunctions (#24)
|
2024-03-25 16:10:44 +01:00 |
|
Waldir Leoncio
|
26ab0107a8
|
Improved handling of BAPS format (#24)
|
2024-03-25 16:10:43 +01:00 |
|
Waldir Leoncio
|
f361975254
|
Fixed calculation of ninds ekat (#24)
|
2024-03-25 16:10:43 +01:00 |
|
Waldir Leoncio
|
530442487f
|
Added processing of BAPS format
To be eventually dropped, but useful for comparing output with MATLAB code.
|
2024-03-25 16:10:41 +01:00 |
|
Waldir Leoncio
|
273edafd30
|
Improved output of writeMixtureInfo()
Also, incremented version number to 0.0.0.9024
|
2023-09-14 12:52:30 +02:00 |
|
Waldir Leoncio
|
63af25a63d
|
Auto-recognizing format of greedyMix() data
Works as long as there's only one period in the file path
|
2023-09-14 11:11:37 +02:00 |
|
Waldir Leoncio
|
a73752364b
|
Fixed output of greedyMix()
|
2023-09-14 11:02:06 +02:00 |
|
Waldir Leoncio
|
ceaf7eca4b
|
Added verbose argument to writeMixtureInfo()
|
2023-09-11 14:06:45 +02:00 |
|
Waldir Leoncio
|
2b756576ac
|
Fixed sink() usage
|
2023-09-11 13:14:08 +02:00 |
|
Waldir Leoncio
|
70ec460106
|
Fixed docs
|
2023-09-11 13:13:55 +02:00 |
|
Waldir Leoncio
|
882fcd4112
|
Exporting importFile()
|
2023-09-11 12:51:41 +02:00 |
|
Waldir Leoncio
|
3e4044bcec
|
Improved handling of supported formats for greedyMix() (#25)
|
2023-09-11 12:49:21 +02:00 |
|
Waldir Leoncio
|
76828387a3
|
Fixed basic parsing of FASTA files (#25)
|
2023-09-11 12:15:30 +02:00 |
|
Waldir Leoncio
|
cfb71bfd6d
|
Fixed syntax (#25)
|
2023-08-11 16:23:02 +02:00 |
|
Waldir Leoncio
|
44e418f838
|
Improved printing (#25)
|
2023-08-11 16:22:45 +02:00 |
|
Waldir Leoncio
|
177685b6a2
|
Partial reversion of b034158 (#25)
It should be OK for Z to be NULL. This currently triggers an issue on initialCounts(), which should be fixed
|
2023-08-11 16:22:29 +02:00 |
|
Waldir Leoncio
|
372891fbe1
|
Fixed to indMix (#25)
|
2023-08-11 14:31:08 +02:00 |
|
Waldir Leoncio
|
3537f18d2c
|
Incorporated handleData() on greedyMix() (#25)
|
2023-08-11 11:18:03 +02:00 |
|
Waldir Leoncio
|
f47e13d3a9
|
Improved handleData() to handle FASTA (#25)
|
2023-08-11 11:13:24 +02:00 |
|
Waldir Leoncio
|
95d9d658cb
|
Added numeric output option to load_fasta() (#25)
|
2023-08-11 11:01:20 +02:00 |
|
Waldir Leoncio
|
bd932e2b6d
|
Added missing documentation for arguments (#25)
|
2023-08-09 15:27:45 +02:00 |
|
Waldir Leoncio
|
85c8c01816
|
Syntax fix (#25)
|
2023-08-09 15:11:54 +02:00 |
|
Waldir Leoncio
|
2739442541
|
Delayed resolution of FIXMEs (#25)
|
2023-08-09 15:09:13 +02:00 |
|
Waldir Leoncio
|
bcdfc5d22d
|
Workaround for usage of MATLAB any() (#25)
|
2023-08-09 15:08:00 +02:00 |
|
Waldir Leoncio
|
b75d38fee4
|
Fixed argument passing (#25)
|
2023-08-09 14:45:43 +02:00 |
|
Waldir Leoncio
|
3d3131b68c
|
squash! Replaced 1:npops with seq_len(npops) (#25)
Replaced 1: with seq_len() and seq_along() (#25).
Helps working around NULL and 0 values.
|
2023-08-09 14:40:09 +02:00 |
|
Waldir Leoncio
|
7bb1a8181e
|
Commented-out debugging print() usage (#25)
|
2023-08-09 14:19:06 +02:00 |
|
Waldir Leoncio
|
f93f7c7de9
|
Replaced 1:npops with seq_len(npops) (#25)
|
2023-08-09 14:18:43 +02:00 |
|
Waldir Leoncio
|
5d3acc7cb0
|
Improved messages (#25)
|
2023-08-09 14:18:20 +02:00 |
|
Waldir Leoncio
|
3ab0a73a02
|
Added iter limit to prevent infinite loop (#25)
|
2023-08-09 14:17:54 +02:00 |
|
Waldir Leoncio
|
b034158e2b
|
Improved handling of NULL objects (#25)
|
2023-08-09 14:17:17 +02:00 |
|
Waldir Leoncio
|
843a929938
|
Syntax fix (#25)
|
2023-08-09 14:16:04 +02:00 |
|
Waldir Leoncio
|
15da6cdced
|
Improved argument retrieval on greedyMix() (#25)
|
2023-08-09 13:13:50 +02:00 |
|
Waldir Leoncio
|
bfeb2796c2
|
Improved example (#25)
|
2023-08-09 13:13:16 +02:00 |
|
Waldir Leoncio
|
ba968e77d5
|
Syntax fix to indMix() (#25)
|
2023-08-09 13:12:18 +02:00 |
|