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ourMELONS/TODO.md
Waldir Leoncio 12efc84437 Improved README and TODO
2019-12-16 17:47:25 +01:00

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Minimum requirements for next stable release

For the first stable release of rBAPS, the following features should be implemented:

  • Clustering of populations (import greedyPoPMix.m from BAPS)
  • Clustering of individuals (import greedyMix.m from BAPS)
  • Spatial clustering of populations (import spatialPoPMixture.m from BAPS)
  • Spatial clustering of individuals (import spatialMixture.m from BAPS)
  • Admixture analysis (import admix1.m from BAPS)

Note to contributors: as tasks get finished, please update this file with an x and keep it there. This should help us fill out a changelog for an eventual stable release.

Known pitfalls

The following behavioral differences have been detected between the Matlab functions and their R counterparts. In order to save time, these differences will not be addressed, since they could require extensive reworking of a function. However, such differences may very well cause unexpected problems in some situations, which is why compiling this list is so important. The list below might provide a good starting point for identifying and fixing bugs:

ownNum2Str

Argument Value Matlab output R output
number 'NaN 'NAN' error
number <vector> '<vector elements>' '<vector elements>' + warning