23 lines
No EOL
741 B
R
23 lines
No EOL
741 B
R
#' @title Clustering of individuals
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#' @param data data file
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#' @param format Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")
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#' @param verbose if \code{TRUE}, prints extra output information
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#' @importFrom utils read.delim
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#' @export
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greedyMix <- function(data, format, verbose = TRUE) {
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format <- tolower(format)
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if (format == "fasta") {
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out <- load_fasta(data)
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} else if (format == "vcf") {
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out <- vcfR::read.vcfR(data, verbose = verbose)
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} else if (format == "sam") {
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stop("SAM files not yet supported." )
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# TODO #18: implement load_sam()
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} else if(format == "genepop") {
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# TODO #19: implement load_genepop()
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stop("GenePop files not yet supported." )
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} else {
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stop("Format not supported.")
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}
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return(out)
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} |