Waldir Leoncio
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205d298a6e
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Opening CI for all branches
Particularly useful for temporary branches like this one, that should be squashed and merged once CI is fixed.
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2021-10-11 13:27:29 +02:00 |
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Waldir Leoncio
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8206353dfe
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Merge branch 'fix-ci' into develop
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2021-09-03 13:31:24 +02:00 |
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Waldir Leoncio
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e7bf9f7b85
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Adding BiocManager to CI
Explicitly installing Bioc dependency. This inelegance should be fixed ASAP.
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2021-09-03 13:30:44 +02:00 |
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Waldir Leoncio
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2b70817317
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Improved handling of data input on greedyMix
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2021-09-03 13:08:40 +02:00 |
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Waldir Leoncio
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4d5539c402
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Improved user feedback
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2021-09-03 12:58:04 +02:00 |
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Waldir Leoncio
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be2dbd02b2
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Dependency fixes
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2021-09-03 12:56:00 +02:00 |
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Waldir Leoncio
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1b1999d2b8
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Merge branch 'issue-18' into develop
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2021-09-03 12:50:46 +02:00 |
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Waldir Leoncio
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d105c40d39
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Refactoring
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2021-09-03 12:50:40 +02:00 |
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Waldir Leoncio
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0cfd13b006
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Added SAM/BAM support (closes #18)
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2021-09-03 12:50:28 +02:00 |
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Waldir Leoncio
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15f2cbcf08
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Replaced SAM example
Current one from https://genome.sph.umich.edu/wiki/SAM. Readable by the "VladaMilch/pdProbeRemap" package.
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2021-09-03 12:10:05 +02:00 |
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Waldir Leoncio
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800bd33376
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Added example SAM file
Example from https://learn.gencore.bio.nyu.edu/ngs-file-formats/sambam-format/
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2021-09-03 12:09:52 +02:00 |
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Waldir Leoncio
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8b44947ecb
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Fixed dependencies
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2021-09-03 11:17:00 +02:00 |
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Waldir Leoncio
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c06943d1b4
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Closed TODO
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2021-09-03 11:11:55 +02:00 |
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Waldir Leoncio
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4c59261542
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Merge branch 'issue-17' into develop
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2021-09-03 11:11:13 +02:00 |
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Waldir Leoncio
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3fd15086af
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Added greedyMix support for VCF (closes #17)
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2021-09-03 11:10:06 +02:00 |
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Waldir Leoncio
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f44a71d97b
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Added badges
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2021-09-03 09:56:46 +02:00 |
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Waldir Leoncio
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784a03e87c
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Merge branch 'ci' into develop
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2021-09-03 09:48:08 +02:00 |
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Waldir Leoncio
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8471930b60
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Replaced Travis with GitHub Actions for CI
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2021-09-03 09:38:30 +02:00 |
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Waldir Leoncio
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448b3fe226
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Updated TODOs to match issues
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2021-09-03 09:14:52 +02:00 |
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Waldir Leoncio
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75df74cb2c
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Merge branch 'issue-15' into develop
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2021-09-03 09:10:34 +02:00 |
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Waldir Leoncio
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682555f8e3
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Adapted greedyMix examples (closes #15)
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2021-09-03 09:10:21 +02:00 |
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Waldir Leoncio
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12edd330b9
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Improved load_fasta validation
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2021-09-03 09:09:09 +02:00 |
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Waldir Leoncio
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26dab21cca
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Merge branch 'issue-16' into develop
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2021-09-03 08:50:52 +02:00 |
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Waldir Leoncio
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a296f9f8fb
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greedyMix changed to channel data load (close #16)
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2021-09-03 08:50:23 +02:00 |
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Waldir Leoncio
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2ada115bf3
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Merge branch 'fix-check' into develop
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2021-08-23 14:34:33 +02:00 |
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Waldir Leoncio
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db760fe899
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Minor changes for clean check
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2021-08-23 14:34:20 +02:00 |
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Waldir Leoncio
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cabb3318dd
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To-do cleanup
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2021-08-23 13:46:48 +02:00 |
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Waldir Leoncio
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621ffdaf87
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Merge branch 'fix-tests' into develop
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2021-08-23 09:10:21 +02:00 |
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Waldir Leoncio
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04a66aa2c1
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Several fixes to code to pass unit tests
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2021-08-23 09:10:10 +02:00 |
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Waldir Leoncio
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ff56213120
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Increment version number
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2021-08-23 07:58:51 +02:00 |
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Waldir Leoncio
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6a124ac3ce
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Improved documentation of load_fasta (#16)
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2021-08-23 06:47:08 +02:00 |
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Waldir Leoncio
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1a3bdd973e
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Merge branch 'issue-16' into develop
Basic replacement. Still needs diploid development.
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2021-08-23 06:42:41 +02:00 |
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Waldir Leoncio
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cafd194880
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Replaced greedyMix() with a stop message
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2021-08-23 06:40:49 +02:00 |
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Gerry Tonkin-Hill
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50ec8618cc
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Added load_fasta from rhierbaps
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2021-08-23 06:32:46 +02:00 |
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Waldir Leoncio
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8956949bff
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Refactoring and syntax fixes
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2021-06-29 10:41:23 +02:00 |
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Waldir Leoncio
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829bcc447e
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Merge branch 'issue-13' into develop
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2021-06-29 10:38:07 +02:00 |
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Waldir Leoncio
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7c2e4c431f
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Reformatting output
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2021-06-29 10:37:52 +02:00 |
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Waldir Leoncio
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67170d1c7b
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Refactoring
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2021-06-29 10:37:42 +02:00 |
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Waldir Leoncio
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f37f8d67c8
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Added recommendation to use the original BAPS
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2021-06-25 07:54:23 +02:00 |
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Waldir Leoncio
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185d71fa25
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Fixed name of development branch (#14)
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2021-06-25 07:49:47 +02:00 |
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Waldir Leoncio
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c975a7c820
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Removed duplicated function
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2021-05-20 09:18:33 +02:00 |
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Waldir Leoncio
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4520fd30fb
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Fixed syntax
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2021-05-20 09:18:05 +02:00 |
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Waldir Leoncio
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8eb81c51d2
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Swapped argument order to match MATLAB
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2021-05-20 09:17:08 +02:00 |
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Waldir Leoncio
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3fd1cac27b
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Merge work on greedyMix into develop
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2021-03-31 10:40:29 +02:00 |
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Waldir Leoncio
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b35053fd3a
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Increment version number
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2021-03-31 10:40:15 +02:00 |
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Waldir Leoncio
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6fb06da866
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Commented out non-interactive test code
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2021-03-31 10:39:42 +02:00 |
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Waldir Leoncio
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39145ee865
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Updated docs
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2021-03-31 10:39:15 +02:00 |
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Waldir Leoncio
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3f9bb0b9bd
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Merge branch 'fix-handleData' into issue-2-greedy-test
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2021-03-31 10:32:14 +02:00 |
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Waldir Leoncio
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3d43ed856f
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Added test for handleData
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2021-03-31 10:31:43 +02:00 |
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Waldir Leoncio
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aec2f40c2c
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Syntax fixes
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2021-03-31 10:31:14 +02:00 |
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