Waldir Leoncio
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e36b656629
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Updated badges
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2022-02-03 10:49:48 +01:00 |
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Waldir Leoncio
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9ad4fa8c76
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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Waldir Leoncio
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b872760f81
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Fixed linkage function
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2022-02-03 10:29:32 +01:00 |
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Waldir Leoncio
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69ca345f11
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Removed docs from matlab2r files (#21)
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2022-02-03 10:10:36 +01:00 |
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Waldir Leoncio
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a381fde4bd
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Added rBAPS help file with matlab2r imports (#21)
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2022-02-03 10:09:58 +01:00 |
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Waldir Leoncio
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a630804122
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Increment version number to 0.0.0.9005
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2022-02-03 09:47:27 +01:00 |
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Waldir Leoncio
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721b2527ca
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Merge branch 'issue-21' into develop (closes #21)
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2022-01-27 12:56:19 +01:00 |
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Waldir Leoncio
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9fb8c08f72
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Removed functions moved to matlab2r (#21)
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2022-01-27 11:40:16 +01:00 |
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Waldir Leoncio
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54b04afe63
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Merge branch 'issue-19-load-genepop' into develop
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2022-01-27 11:19:18 +01:00 |
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Waldir Leoncio
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9d1e8f7ae6
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Adding adegenet to imports
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2022-01-27 11:19:10 +01:00 |
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Waldir Leoncio
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1832ad7a45
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Increment version number to 0.0.0.9004
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2022-01-27 11:16:47 +01:00 |
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Waldir Leoncio
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95ff85f021
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Added read.genepop() to greedyMix() (closes #19)
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2022-01-27 11:16:32 +01:00 |
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Waldir Leoncio
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c5cf0edd1d
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Removed unnecessary concantenations
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2021-11-10 14:55:11 +01:00 |
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Waldir Leoncio
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8b0d1c3cc3
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More syntax fixes
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2021-11-10 14:45:06 +01:00 |
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Waldir Leoncio
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1b99104cb4
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Syntax fix
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2021-11-10 14:32:18 +01:00 |
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Waldir Leoncio
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eb22fbf286
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Merge fix-linting into develop (closes #23)
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2021-11-10 14:26:54 +01:00 |
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Waldir Leoncio
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2ff9d5ffe9
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Added linting to CI workflow (#23)
Customized linting rules on CI (#23)
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2021-11-10 14:26:27 +01:00 |
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Waldir Leoncio
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fca9caa731
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Restyled files
Ran through styler::style_dir() in the R and tests directories in preparation for #23.
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2021-11-10 14:25:50 +01:00 |
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Waldir Leoncio
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a9c7211465
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Changed location of covr installation
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2021-11-10 13:52:44 +01:00 |
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Waldir Leoncio
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0e01845876
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Installing covr on CI machines
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2021-11-10 13:43:21 +01:00 |
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Waldir Leoncio
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ae23090a0e
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Added Codecov to CI workflow
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2021-11-10 13:36:47 +01:00 |
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Waldir Leoncio
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37265685de
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Added codecov badge
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2021-11-10 13:29:29 +01:00 |
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Waldir Leoncio
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ced8b0f7f7
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Merge issue-20-fix-CI into develop (closes #20)
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2021-11-10 12:46:27 +01:00 |
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Waldir Leoncio
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aec2049a33
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Explicitly installing GenomicRanges
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2021-11-10 12:24:00 +01:00 |
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Waldir Leoncio
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0f004a13ba
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Merge branch 'develop' into issue-20-fix-CI
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2021-11-10 12:15:09 +01:00 |
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Waldir Leoncio
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c15392b7e0
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Updated docs, ignored folder
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2021-10-11 14:26:07 +02:00 |
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Waldir Leoncio
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ee4d35ee85
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Fixup to apt command on ad2ef0e
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2021-10-11 14:00:00 +02:00 |
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Waldir Leoncio
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ad2ef0e789
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Installing libcurl on Ubuntu VM
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2021-10-11 13:57:03 +02:00 |
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Waldir Leoncio
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205d298a6e
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Opening CI for all branches
Particularly useful for temporary branches like this one, that should be squashed and merged once CI is fixed.
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2021-10-11 13:27:29 +02:00 |
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Waldir Leoncio
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8206353dfe
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Merge branch 'fix-ci' into develop
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2021-09-03 13:31:24 +02:00 |
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Waldir Leoncio
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e7bf9f7b85
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Adding BiocManager to CI
Explicitly installing Bioc dependency. This inelegance should be fixed ASAP.
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2021-09-03 13:30:44 +02:00 |
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Waldir Leoncio
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2b70817317
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Improved handling of data input on greedyMix
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2021-09-03 13:08:40 +02:00 |
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Waldir Leoncio
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4d5539c402
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Improved user feedback
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2021-09-03 12:58:04 +02:00 |
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Waldir Leoncio
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be2dbd02b2
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Dependency fixes
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2021-09-03 12:56:00 +02:00 |
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Waldir Leoncio
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1b1999d2b8
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Merge branch 'issue-18' into develop
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2021-09-03 12:50:46 +02:00 |
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Waldir Leoncio
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d105c40d39
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Refactoring
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2021-09-03 12:50:40 +02:00 |
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Waldir Leoncio
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0cfd13b006
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Added SAM/BAM support (closes #18)
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2021-09-03 12:50:28 +02:00 |
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Waldir Leoncio
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15f2cbcf08
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Replaced SAM example
Current one from https://genome.sph.umich.edu/wiki/SAM. Readable by the "VladaMilch/pdProbeRemap" package.
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2021-09-03 12:10:05 +02:00 |
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Waldir Leoncio
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800bd33376
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Added example SAM file
Example from https://learn.gencore.bio.nyu.edu/ngs-file-formats/sambam-format/
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2021-09-03 12:09:52 +02:00 |
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Waldir Leoncio
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8b44947ecb
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Fixed dependencies
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2021-09-03 11:17:00 +02:00 |
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Waldir Leoncio
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c06943d1b4
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Closed TODO
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2021-09-03 11:11:55 +02:00 |
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Waldir Leoncio
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4c59261542
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Merge branch 'issue-17' into develop
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2021-09-03 11:11:13 +02:00 |
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Waldir Leoncio
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3fd15086af
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Added greedyMix support for VCF (closes #17)
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2021-09-03 11:10:06 +02:00 |
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Waldir Leoncio
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f44a71d97b
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Added badges
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2021-09-03 09:56:46 +02:00 |
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Waldir Leoncio
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784a03e87c
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Merge branch 'ci' into develop
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2021-09-03 09:48:08 +02:00 |
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Waldir Leoncio
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8471930b60
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Replaced Travis with GitHub Actions for CI
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2021-09-03 09:38:30 +02:00 |
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Waldir Leoncio
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448b3fe226
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Updated TODOs to match issues
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2021-09-03 09:14:52 +02:00 |
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Waldir Leoncio
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75df74cb2c
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Merge branch 'issue-15' into develop
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2021-09-03 09:10:34 +02:00 |
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Waldir Leoncio
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682555f8e3
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Adapted greedyMix examples (closes #15)
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2021-09-03 09:10:21 +02:00 |
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Waldir Leoncio
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12edd330b9
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Improved load_fasta validation
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2021-09-03 09:09:09 +02:00 |
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