Waldir Leoncio
dd6ee912bd
Syntax fixes
2024-09-27 13:01:30 +02:00
Waldir Leoncio
9e554d5d4b
Aligned processing of Genepop with MATLAB code
2024-09-13 13:53:01 +02:00
Waldir Leoncio
ca358ff0fb
Improved handling of FASTA data ( #24 )
2024-08-09 14:57:07 +02:00
Waldir Leoncio
7b7968f00b
Added function to convert from FASTA to BAPS ( #24 )
2024-08-09 13:55:04 +02:00
Waldir Leoncio
6e08c35f13
Unwrapped `greedyMix() example ( #24 )
2024-08-07 11:42:29 +02:00
Waldir Leoncio
c3b8da0012
Changed default npops to 3 ( #24 )
2024-04-10 16:06:59 +02:00
Waldir Leoncio
f5c09094b0
Skips greedyMix() example until #24 is fixed
2024-04-08 13:34:14 +02:00
Waldir Leoncio
f676042a17
Updated documentation ( #24 )
2024-04-08 13:29:03 +02:00
Waldir Leoncio
6209bb33fa
Fails for FAST input to greedyMix() ( #24 )
...
This is a desirable feature, but was not implemented in the original BAPS, so better leave it out until the original planned features is working.
2024-04-08 13:14:54 +02:00
Waldir Leoncio
6c3e2aff04
Fixed calculation og ninds ( #24 )
2024-04-08 10:11:25 +02:00
Waldir Leoncio
26ab0107a8
Improved handling of BAPS format ( #24 )
2024-03-25 16:10:43 +01:00
Waldir Leoncio
f361975254
Fixed calculation of ninds ekat ( #24 )
2024-03-25 16:10:43 +01:00
Waldir Leoncio
63af25a63d
Auto-recognizing format of greedyMix() data
...
Works as long as there's only one period in the file path
2023-09-14 11:11:37 +02:00
Waldir Leoncio
a73752364b
Fixed output of greedyMix()
2023-09-14 11:02:06 +02:00
Waldir Leoncio
ceaf7eca4b
Added verbose argument to writeMixtureInfo()
2023-09-11 14:06:45 +02:00
Waldir Leoncio
70ec460106
Fixed docs
2023-09-11 13:13:55 +02:00
Waldir Leoncio
76828387a3
Fixed basic parsing of FASTA files ( #25 )
2023-09-11 12:15:30 +02:00
Waldir Leoncio
372891fbe1
Fixed to indMix ( #25 )
2023-08-11 14:31:08 +02:00
Waldir Leoncio
3537f18d2c
Incorporated handleData() on greedyMix() ( #25 )
2023-08-11 11:18:03 +02:00
Waldir Leoncio
bd932e2b6d
Added missing documentation for arguments ( #25 )
2023-08-09 15:27:45 +02:00
Waldir Leoncio
b75d38fee4
Fixed argument passing ( #25 )
2023-08-09 14:45:43 +02:00
Waldir Leoncio
b034158e2b
Improved handling of NULL objects ( #25 )
2023-08-09 14:17:17 +02:00
Waldir Leoncio
15da6cdced
Improved argument retrieval on greedyMix() ( #25 )
2023-08-09 13:13:50 +02:00
Waldir Leoncio
bfeb2796c2
Improved example ( #25 )
2023-08-09 13:13:16 +02:00
Waldir Leoncio
ba968e77d5
Syntax fix to indMix() ( #25 )
2023-08-09 13:12:18 +02:00
Waldir Leoncio
3069577ebd
Removing handleData() from greedyMix() ( #25 )
...
Apparently that function is only used if the input is Genepop or BAPS format. However, its code might be useful for reducing some of the input of greedyMix(), as it contains the calculation for them.
2023-08-09 12:50:33 +02:00
Waldir Leoncio
cae1fe4c1e
Incorporating subfunctions of greedyMix() ( #25 )
2023-08-09 12:06:09 +02:00
Waldir Leoncio
103dc6acd6
Added MATLAB code from original greedyMix() ( #25 )
2023-08-09 11:26:29 +02:00
Waldir Leoncio
bf7d05eb8d
Moved file import away from greedyMix() ( #25 )
2023-08-09 11:11:12 +02:00
Waldir Leoncio
687a6fb671
Moved used datasets to /isnt/extdata ( #25 )
2023-08-09 10:54:48 +02:00
Waldir Leoncio
835ac7e6b9
Fixed several linting issues
2022-07-28 15:47:36 +02:00
Waldir Leoncio
ea0190b874
Syntax fixes, added documentation
2022-07-19 14:34:08 +02:00
Waldir Leoncio
95ff85f021
Added read.genepop() to greedyMix() ( closes #19 )
2022-01-27 11:16:32 +01:00
Waldir Leoncio
fca9caa731
Restyled files
...
Ran through styler::style_dir() in the R and tests directories in preparation for #23 .
2021-11-10 14:25:50 +01:00
Waldir Leoncio
2b70817317
Improved handling of data input on greedyMix
2021-09-03 13:08:40 +02:00
Waldir Leoncio
4d5539c402
Improved user feedback
2021-09-03 12:58:04 +02:00
Waldir Leoncio
be2dbd02b2
Dependency fixes
2021-09-03 12:56:00 +02:00
Waldir Leoncio
0cfd13b006
Added SAM/BAM support ( closes #18 )
2021-09-03 12:50:28 +02:00
Waldir Leoncio
15f2cbcf08
Replaced SAM example
...
Current one from https://genome.sph.umich.edu/wiki/SAM . Readable by the "VladaMilch/pdProbeRemap" package.
2021-09-03 12:10:05 +02:00
Waldir Leoncio
8b44947ecb
Fixed dependencies
2021-09-03 11:17:00 +02:00
Waldir Leoncio
c06943d1b4
Closed TODO
2021-09-03 11:11:55 +02:00
Waldir Leoncio
3fd15086af
Added greedyMix support for VCF ( closes #17 )
2021-09-03 11:10:06 +02:00
Waldir Leoncio
448b3fe226
Updated TODOs to match issues
2021-09-03 09:14:52 +02:00
Waldir Leoncio
a296f9f8fb
greedyMix changed to channel data load ( close #16 )
2021-09-03 08:50:23 +02:00
Waldir Leoncio
cafd194880
Replaced greedyMix() with a stop message
2021-08-23 06:40:49 +02:00
Waldir Leoncio
8956949bff
Refactoring and syntax fixes
2021-06-29 10:41:23 +02:00
Waldir Leoncio
4520fd30fb
Fixed syntax
2021-05-20 09:18:05 +02:00
Waldir Leoncio
aec2f40c2c
Syntax fixes
2021-03-31 10:31:14 +02:00
Waldir Leoncio
d16de2ba7d
Uncommented translated functions
2021-03-30 08:34:41 +02:00
Waldir Leoncio
ef540baf7e
Reformatting BAPS input
2021-03-30 08:34:31 +02:00
