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  • 461975c823 Merge branch 'issue-3' into develop Waldir Leoncio 2022-07-28 14:51:37 +02:00
  • 86a5dda6d6 Translated mysetdiff() (#3) Waldir Leoncio 2022-07-28 14:43:04 +02:00
  • 84e0eb61d8 Translated computeDiffInCliqCounts() (#3) Waldir Leoncio 2022-07-28 14:23:35 +02:00
  • eef819a9c3 Merge branch 'issue-3' into develop Waldir Leoncio 2022-07-28 14:15:12 +02:00
  • 31ab81a215 Translated computeCounts() (#3) Waldir Leoncio 2022-07-28 11:16:59 +02:00
  • 40854fe253 Increment version number to 0.0.0.9009 Waldir Leoncio 2022-07-28 10:18:11 +02:00
  • ea0190b874 Syntax fixes, added documentation Waldir Leoncio 2022-07-19 14:34:08 +02:00
  • 78aae03cb1 Merge branch 'issue-2' into develop (#2) Waldir Leoncio 2022-07-19 13:47:25 +02:00
  • 8f3193e59b Translated greedyPopMix() (#2) Waldir Leoncio 2022-07-19 13:46:52 +02:00
  • 87f4ffb8d4 Translated waitALittle() Waldir Leoncio 2022-07-19 12:57:13 +02:00
  • 4e8c3021e0 Added diff translation of greedyPopMix() (#2) Waldir Leoncio 2022-07-19 11:54:16 +02:00
  • fccd8b406b Merge branch 'issue-2' into develop Waldir Leoncio 2022-05-19 15:08:03 +02:00
  • f0d4858149 Translated writeMixtureInfoPop() (#2) Waldir Leoncio 2022-05-19 10:46:01 +02:00
  • 26e2a48c97 Moved original MATLAB code to package Waldir Leoncio 2022-05-13 13:38:35 +02:00
  • 3d3b8cb8c6 Increment version number to 0.0.0.9008 Waldir Leoncio 2022-05-13 12:46:47 +02:00
  • 5be7fb6906 Merge branch 'issue-2' into develop Waldir Leoncio 2022-05-13 12:44:43 +02:00
  • a469240f81 Replaced some syntax Waldir Leoncio 2022-05-13 12:41:19 +02:00
  • 1cc0fba114 Added function documentation Waldir Leoncio 2022-05-13 12:39:57 +02:00
  • fff8574b82 Translated lueGenePopDataPop() (#2) Waldir Leoncio 2022-05-13 11:17:59 +02:00
  • 82b7515e51 Increment version number to 0.0.0.9007 Waldir Leoncio 2022-05-13 11:17:25 +02:00
  • 55b3362c58 Fixed minor check notes Waldir Leoncio 2022-05-13 11:22:18 +02:00
  • 2ac99025b4 Merge issue-2-translate-greedyPopMix into develop Waldir Leoncio 2022-04-13 09:17:46 +02:00
  • ae57dd4536 Updated docs Waldir Leoncio 2022-04-13 09:17:40 +02:00
  • c0f4072525 Bumped build version Waldir Leoncio 2022-04-13 09:13:25 +02:00
  • 9b1cf810a3 Fixing test expectation Waldir Leoncio 2022-04-13 08:59:07 +02:00
  • f81a078365 Reorganizing tests Waldir Leoncio 2022-04-12 15:50:16 +02:00
  • 40f2b3f07a Added test unit for handlePopData() Waldir Leoncio 2022-04-12 15:47:22 +02:00
  • 03db7f4124 Translated handlePopData (#2) Waldir Leoncio 2022-04-12 14:31:54 +02:00
  • 9224c44cb6 Merge issue-2-translate-greedyPopMix into develop Waldir Leoncio 2022-04-12 14:15:09 +02:00
  • 58ee8ccb92 Added unit test Waldir Leoncio 2022-02-08 14:03:41 +01:00
  • c9c310d1fa Translated getPopDistancesByKL (#2) Waldir Leoncio 2022-02-08 14:01:02 +01:00
  • d71bd0567a Removed translated code Waldir Leoncio 2022-02-08 11:27:22 +01:00
  • e9e858c667 Merge 2-translate-greedyPopMix into develop Waldir Leoncio 2022-02-08 11:23:29 +01:00
  • 98cff11128 Added unit test file for greedyPopMix functions (#2) Waldir Leoncio 2022-02-08 11:17:23 +01:00
  • 1462f6167f Translated findOutRowsFromInd (#2) Waldir Leoncio 2022-02-08 11:16:57 +01:00
  • 4a7cf802e8 Removed translated function from MATLAB script Waldir Leoncio 2022-02-03 12:58:54 +01:00
  • 1baa99540c Merge 2-translate-greedyPopMix into develop Waldir Leoncio 2022-02-03 12:57:01 +01:00
  • 8860f0159c Translated fiksaaPartitioYksiloTasolle() (#2) Waldir Leoncio 2022-02-03 12:56:20 +01:00
  • cf77908604 Merge branch 'split-ci' into develop Waldir Leoncio 2022-02-03 11:09:10 +01:00
  • 857083a38f Moved lint and coverage CI to their own YML Waldir Leoncio 2022-02-03 11:00:46 +01:00
  • 9f36a3046b Renamed monolithic YML Waldir Leoncio 2022-02-03 10:56:52 +01:00
  • e0b2960f1a Merge branch 'import-matlab2r' into develop Waldir Leoncio 2022-02-03 10:49:59 +01:00
  • e36b656629 Updated badges Waldir Leoncio 2022-02-03 10:49:48 +01:00
  • 9ad4fa8c76 Resolved conflicts involving homonymous functions Waldir Leoncio 2022-02-03 10:43:34 +01:00
  • b872760f81 Fixed linkage function Waldir Leoncio 2022-02-03 10:29:32 +01:00
  • 69ca345f11 Removed docs from matlab2r files (#21) Waldir Leoncio 2022-02-03 10:10:36 +01:00
  • a381fde4bd Added rBAPS help file with matlab2r imports (#21) Waldir Leoncio 2022-02-03 10:08:35 +01:00
  • a630804122 Increment version number to 0.0.0.9005 Waldir Leoncio 2022-02-03 09:47:27 +01:00
  • 721b2527ca Merge branch 'issue-21' into develop (closes #21) Waldir Leoncio 2022-01-27 12:56:19 +01:00
  • 9fb8c08f72 Removed functions moved to matlab2r (#21) Waldir Leoncio 2022-01-27 11:40:16 +01:00
  • 54b04afe63 Merge branch 'issue-19-load-genepop' into develop Waldir Leoncio 2022-01-27 11:19:18 +01:00
  • 9d1e8f7ae6 Adding adegenet to imports Waldir Leoncio 2022-01-27 11:19:10 +01:00
  • 1832ad7a45 Increment version number to 0.0.0.9004 Waldir Leoncio 2022-01-27 11:16:47 +01:00
  • 95ff85f021 Added read.genepop() to greedyMix() (closes #19) Waldir Leoncio 2022-01-27 11:16:32 +01:00
  • c5cf0edd1d Removed unnecessary concantenations Waldir Leoncio 2021-11-10 14:55:11 +01:00
  • 8b0d1c3cc3 More syntax fixes Waldir Leoncio 2021-11-10 14:45:06 +01:00
  • 1b99104cb4 Syntax fix Waldir Leoncio 2021-11-10 14:32:18 +01:00
  • eb22fbf286 Merge fix-linting into develop (closes #23) Waldir Leoncio 2021-11-10 14:26:54 +01:00
  • 2ff9d5ffe9 Added linting to CI workflow (#23) Waldir Leoncio 2021-11-10 14:08:21 +01:00
  • fca9caa731 Restyled files Waldir Leoncio 2021-11-10 14:02:35 +01:00
  • a9c7211465 Changed location of covr installation Waldir Leoncio 2021-11-10 13:52:44 +01:00
  • 0e01845876 Installing covr on CI machines Waldir Leoncio 2021-11-10 13:43:21 +01:00
  • ae23090a0e Added Codecov to CI workflow Waldir Leoncio 2021-11-10 13:36:47 +01:00
  • 37265685de Added codecov badge Waldir Leoncio 2021-11-10 13:29:29 +01:00
  • ced8b0f7f7 Merge issue-20-fix-CI into develop (closes #20) Waldir Leoncio 2021-11-10 12:46:27 +01:00
  • aec2049a33 Explicitly installing GenomicRanges Waldir Leoncio 2021-11-10 12:24:00 +01:00
  • 0f004a13ba Merge branch 'develop' into issue-20-fix-CI Waldir Leoncio 2021-11-10 12:15:09 +01:00
  • c15392b7e0 Updated docs, ignored folder Waldir Leoncio 2021-10-11 14:26:07 +02:00
  • ee4d35ee85 Fixup to apt command on ad2ef0e Waldir Leoncio 2021-10-11 14:00:00 +02:00
  • ad2ef0e789 Installing libcurl on Ubuntu VM Waldir Leoncio 2021-10-11 13:57:03 +02:00
  • 205d298a6e Opening CI for all branches Waldir Leoncio 2021-10-11 13:27:29 +02:00
  • 8206353dfe Merge branch 'fix-ci' into develop Waldir Leoncio 2021-09-03 13:31:24 +02:00
  • e7bf9f7b85 Adding BiocManager to CI Waldir Leoncio 2021-09-03 13:14:39 +02:00
  • 2b70817317 Improved handling of data input on greedyMix Waldir Leoncio 2021-09-03 13:08:40 +02:00
  • 4d5539c402 Improved user feedback Waldir Leoncio 2021-09-03 12:58:04 +02:00
  • be2dbd02b2 Dependency fixes Waldir Leoncio 2021-09-03 12:56:00 +02:00
  • 1b1999d2b8 Merge branch 'issue-18' into develop Waldir Leoncio 2021-09-03 12:50:46 +02:00
  • d105c40d39 Refactoring Waldir Leoncio 2021-09-03 12:50:40 +02:00
  • 0cfd13b006 Added SAM/BAM support (closes #18) Waldir Leoncio 2021-09-03 12:50:11 +02:00
  • 15f2cbcf08 Replaced SAM example Waldir Leoncio 2021-09-03 12:05:56 +02:00
  • 800bd33376 Added example SAM file Waldir Leoncio 2021-09-03 11:42:05 +02:00
  • 8b44947ecb Fixed dependencies Waldir Leoncio 2021-09-03 11:17:00 +02:00
  • c06943d1b4 Closed TODO Waldir Leoncio 2021-09-03 11:11:55 +02:00
  • 4c59261542 Merge branch 'issue-17' into develop Waldir Leoncio 2021-09-03 11:11:13 +02:00
  • 3fd15086af Added greedyMix support for VCF (closes #17) Waldir Leoncio 2021-09-03 11:10:06 +02:00
  • f44a71d97b Added badges Waldir Leoncio 2021-09-03 09:56:46 +02:00
  • 784a03e87c Merge branch 'ci' into develop Waldir Leoncio 2021-09-03 09:48:02 +02:00
  • 8471930b60 Replaced Travis with GitHub Actions for CI Waldir Leoncio 2021-09-03 09:38:19 +02:00
  • 448b3fe226 Updated TODOs to match issues Waldir Leoncio 2021-09-03 09:14:52 +02:00
  • 75df74cb2c Merge branch 'issue-15' into develop Waldir Leoncio 2021-09-03 09:10:34 +02:00
  • 682555f8e3 Adapted greedyMix examples (closes #15) Waldir Leoncio 2021-09-03 09:10:21 +02:00
  • 12edd330b9 Improved load_fasta validation Waldir Leoncio 2021-09-03 09:09:09 +02:00
  • 26dab21cca Merge branch 'issue-16' into develop Waldir Leoncio 2021-09-03 08:50:52 +02:00
  • a296f9f8fb greedyMix changed to channel data load (close #16) Waldir Leoncio 2021-09-03 08:43:37 +02:00
  • 2ada115bf3 Merge branch 'fix-check' into develop Waldir Leoncio 2021-08-23 14:34:33 +02:00
  • db760fe899 Minor changes for clean check Waldir Leoncio 2021-08-23 14:34:20 +02:00
  • cabb3318dd To-do cleanup Waldir Leoncio 2021-08-23 13:46:48 +02:00
  • 621ffdaf87 Merge branch 'fix-tests' into develop Waldir Leoncio 2021-08-23 09:10:21 +02:00
  • 04a66aa2c1 Several fixes to code to pass unit tests Waldir Leoncio 2021-08-23 08:34:28 +02:00
  • ff56213120 Increment version number Waldir Leoncio 2021-08-23 07:58:51 +02:00