Waldir Leoncio
aa675d1804
Updated docs
2024-09-13 14:23:11 +02:00
Waldir Leoncio
9ff5f39c39
Disabled FASTA tests on greedyMix() ( #24 )
2024-08-26 06:30:49 +02:00
Waldir Leoncio
7b7968f00b
Added function to convert from FASTA to BAPS ( #24 )
2024-08-09 13:55:04 +02:00
Waldir Leoncio
6e08c35f13
Unwrapped `greedyMix() example ( #24 )
2024-08-07 11:42:29 +02:00
Waldir Leoncio
3ce6659120
Updated docs
2024-07-02 16:53:04 +02:00
Waldir Leoncio
320bb28a7a
Fixed docs
2024-06-26 14:27:02 +02:00
Waldir Leoncio
c3b8da0012
Changed default npops to 3 ( #24 )
2024-04-10 16:06:59 +02:00
Waldir Leoncio
58a5e5a2fd
laskeMuutokset() reads npop from parent functions (#24 )
2024-04-10 16:06:58 +02:00
Waldir Leoncio
f5c09094b0
Skips greedyMix() example until #24 is fixed
2024-04-08 13:34:14 +02:00
Waldir Leoncio
f676042a17
Updated documentation ( #24 )
2024-04-08 13:29:03 +02:00
Waldir Leoncio
9ed39d403b
Updated docs
2023-09-14 12:53:34 +02:00
Waldir Leoncio
ceaf7eca4b
Added verbose argument to writeMixtureInfo()
2023-09-11 14:06:45 +02:00
Waldir Leoncio
70ec460106
Fixed docs
2023-09-11 13:13:55 +02:00
Waldir Leoncio
882fcd4112
Exporting importFile()
2023-09-11 12:51:41 +02:00
Waldir Leoncio
76828387a3
Fixed basic parsing of FASTA files ( #25 )
2023-09-11 12:15:30 +02:00
Waldir Leoncio
3537f18d2c
Incorporated handleData() on greedyMix() ( #25 )
2023-08-11 11:18:03 +02:00
Waldir Leoncio
f47e13d3a9
Improved handleData() to handle FASTA ( #25 )
2023-08-11 11:13:24 +02:00
Waldir Leoncio
95d9d658cb
Added numeric output option to load_fasta() ( #25 )
2023-08-11 11:01:20 +02:00
Waldir Leoncio
bd932e2b6d
Added missing documentation for arguments ( #25 )
2023-08-09 15:27:45 +02:00
Waldir Leoncio
15da6cdced
Improved argument retrieval on greedyMix() ( #25 )
2023-08-09 13:13:50 +02:00
Waldir Leoncio
bfeb2796c2
Improved example ( #25 )
2023-08-09 13:13:16 +02:00
Waldir Leoncio
3069577ebd
Removing handleData() from greedyMix() ( #25 )
...
Apparently that function is only used if the input is Genepop or BAPS format. However, its code might be useful for reducing some of the input of greedyMix(), as it contains the calculation for them.
2023-08-09 12:50:33 +02:00
Waldir Leoncio
cae1fe4c1e
Incorporating subfunctions of greedyMix() ( #25 )
2023-08-09 12:06:09 +02:00
Waldir Leoncio
687a6fb671
Moved used datasets to /isnt/extdata ( #25 )
2023-08-09 10:54:48 +02:00
Waldir Leoncio
7aff7bbb82
Internalized all functions except greedyMix() and load_fasta() ( #25 )
2023-08-09 09:36:15 +02:00
Waldir Leoncio
fe099e576e
Updated docs
2022-11-16 12:51:06 +01:00
Waldir Leoncio
85c412f347
Translated testaaKoordinaatit() ( #3 )
2022-11-16 11:56:21 +01:00
Waldir Leoncio
46dc08905a
Translated laskemuutokset{1-5}() ( #3 )
2022-09-15 12:47:22 +02:00
Waldir Leoncio
3efb54d8b5
Refactored remaining laskeMuutokset as R6 methods
2022-08-25 13:48:17 +02:00
Waldir Leoncio
c05a500d5f
Translated laskeVarmuus ( #3 )
2022-08-25 13:03:36 +02:00
Waldir Leoncio
1667682c5e
Refactored laskeMuutokset4() as an R6 method
2022-08-25 12:54:55 +02:00
Waldir Leoncio
835ac7e6b9
Fixed several linting issues
2022-07-28 15:47:36 +02:00
Waldir Leoncio
ea0190b874
Syntax fixes, added documentation
2022-07-19 14:34:08 +02:00
Waldir Leoncio
f0d4858149
Translated writeMixtureInfoPop() ( #2 )
2022-05-19 15:07:53 +02:00
Waldir Leoncio
1cc0fba114
Added function documentation
2022-05-13 12:40:34 +02:00
Waldir Leoncio
ae57dd4536
Updated docs
2022-04-13 09:17:40 +02:00
Waldir Leoncio
03db7f4124
Translated handlePopData ( #2 )
2022-04-13 09:12:59 +02:00
Waldir Leoncio
9ad4fa8c76
Resolved conflicts involving homonymous functions
2022-02-03 10:43:34 +01:00
Waldir Leoncio
69ca345f11
Removed docs from matlab2r files ( #21 )
2022-02-03 10:10:36 +01:00
Waldir Leoncio
a381fde4bd
Added rBAPS help file with matlab2r imports ( #21 )
2022-02-03 10:09:58 +01:00
Waldir Leoncio
fca9caa731
Restyled files
...
Ran through styler::style_dir() in the R and tests directories in preparation for #23 .
2021-11-10 14:25:50 +01:00
Waldir Leoncio
2b70817317
Improved handling of data input on greedyMix
2021-09-03 13:08:40 +02:00
Waldir Leoncio
0cfd13b006
Added SAM/BAM support ( closes #18 )
2021-09-03 12:50:28 +02:00
Waldir Leoncio
8b44947ecb
Fixed dependencies
2021-09-03 11:17:00 +02:00
Waldir Leoncio
12edd330b9
Improved load_fasta validation
2021-09-03 09:09:09 +02:00
Waldir Leoncio
a296f9f8fb
greedyMix changed to channel data load ( close #16 )
2021-09-03 08:50:23 +02:00
Waldir Leoncio
db760fe899
Minor changes for clean check
2021-08-23 14:34:20 +02:00
Waldir Leoncio
04a66aa2c1
Several fixes to code to pass unit tests
2021-08-23 09:10:10 +02:00
Waldir Leoncio
6a124ac3ce
Improved documentation of load_fasta ( #16 )
2021-08-23 06:47:08 +02:00
Waldir Leoncio
cafd194880
Replaced greedyMix() with a stop message
2021-08-23 06:40:49 +02:00
