Waldir Leoncio
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a469240f81
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Replaced some syntax
Replaced translated code with equivalent code from `lueGenePopData()`
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2022-05-13 12:41:19 +02:00 |
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Waldir Leoncio
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1cc0fba114
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Added function documentation
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2022-05-13 12:40:34 +02:00 |
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Waldir Leoncio
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fff8574b82
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Translated lueGenePopDataPop() (#2)
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2022-05-13 11:22:31 +02:00 |
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Waldir Leoncio
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55b3362c58
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Fixed minor check notes
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2022-05-13 11:22:18 +02:00 |
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Waldir Leoncio
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03db7f4124
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Translated handlePopData (#2)
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2022-04-13 09:12:59 +02:00 |
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Waldir Leoncio
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c9c310d1fa
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Translated getPopDistancesByKL (#2)
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2022-04-12 14:14:12 +02:00 |
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Waldir Leoncio
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1462f6167f
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Translated findOutRowsFromInd (#2)
Importing one more function from matlab2r
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2022-02-08 11:23:14 +01:00 |
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Waldir Leoncio
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8860f0159c
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Translated fiksaaPartitioYksiloTasolle() (#2)
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2022-02-03 12:56:20 +01:00 |
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Waldir Leoncio
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9ad4fa8c76
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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Waldir Leoncio
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b872760f81
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Fixed linkage function
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2022-02-03 10:29:32 +01:00 |
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Waldir Leoncio
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69ca345f11
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Removed docs from matlab2r files (#21)
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2022-02-03 10:10:36 +01:00 |
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Waldir Leoncio
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a381fde4bd
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Added rBAPS help file with matlab2r imports (#21)
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2022-02-03 10:09:58 +01:00 |
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Waldir Leoncio
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9fb8c08f72
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Removed functions moved to matlab2r (#21)
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2022-01-27 11:40:16 +01:00 |
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Waldir Leoncio
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95ff85f021
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Added read.genepop() to greedyMix() (closes #19)
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2022-01-27 11:16:32 +01:00 |
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Waldir Leoncio
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c5cf0edd1d
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Removed unnecessary concantenations
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2021-11-10 14:55:11 +01:00 |
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Waldir Leoncio
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fca9caa731
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Restyled files
Ran through styler::style_dir() in the R and tests directories in preparation for #23.
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2021-11-10 14:25:50 +01:00 |
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Waldir Leoncio
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2b70817317
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Improved handling of data input on greedyMix
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2021-09-03 13:08:40 +02:00 |
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Waldir Leoncio
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4d5539c402
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Improved user feedback
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2021-09-03 12:58:04 +02:00 |
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Waldir Leoncio
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be2dbd02b2
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Dependency fixes
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2021-09-03 12:56:00 +02:00 |
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Waldir Leoncio
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0cfd13b006
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Added SAM/BAM support (closes #18)
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2021-09-03 12:50:28 +02:00 |
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Waldir Leoncio
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15f2cbcf08
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Replaced SAM example
Current one from https://genome.sph.umich.edu/wiki/SAM. Readable by the "VladaMilch/pdProbeRemap" package.
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2021-09-03 12:10:05 +02:00 |
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Waldir Leoncio
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8b44947ecb
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Fixed dependencies
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2021-09-03 11:17:00 +02:00 |
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Waldir Leoncio
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c06943d1b4
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Closed TODO
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2021-09-03 11:11:55 +02:00 |
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Waldir Leoncio
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3fd15086af
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Added greedyMix support for VCF (closes #17)
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2021-09-03 11:10:06 +02:00 |
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Waldir Leoncio
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448b3fe226
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Updated TODOs to match issues
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2021-09-03 09:14:52 +02:00 |
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Waldir Leoncio
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12edd330b9
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Improved load_fasta validation
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2021-09-03 09:09:09 +02:00 |
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Waldir Leoncio
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a296f9f8fb
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greedyMix changed to channel data load (close #16)
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2021-09-03 08:50:23 +02:00 |
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Waldir Leoncio
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db760fe899
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Minor changes for clean check
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2021-08-23 14:34:20 +02:00 |
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Waldir Leoncio
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cabb3318dd
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To-do cleanup
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2021-08-23 13:46:48 +02:00 |
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Waldir Leoncio
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04a66aa2c1
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Several fixes to code to pass unit tests
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2021-08-23 09:10:10 +02:00 |
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Waldir Leoncio
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6a124ac3ce
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Improved documentation of load_fasta (#16)
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2021-08-23 06:47:08 +02:00 |
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Waldir Leoncio
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cafd194880
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Replaced greedyMix() with a stop message
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2021-08-23 06:40:49 +02:00 |
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Gerry Tonkin-Hill
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50ec8618cc
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Added load_fasta from rhierbaps
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2021-08-23 06:32:46 +02:00 |
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Waldir Leoncio
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8956949bff
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Refactoring and syntax fixes
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2021-06-29 10:41:23 +02:00 |
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Waldir Leoncio
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7c2e4c431f
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Reformatting output
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2021-06-29 10:37:52 +02:00 |
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Waldir Leoncio
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67170d1c7b
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Refactoring
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2021-06-29 10:37:42 +02:00 |
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Waldir Leoncio
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c975a7c820
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Removed duplicated function
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2021-05-20 09:18:33 +02:00 |
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Waldir Leoncio
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4520fd30fb
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Fixed syntax
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2021-05-20 09:18:05 +02:00 |
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Waldir Leoncio
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8eb81c51d2
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Swapped argument order to match MATLAB
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2021-05-20 09:17:08 +02:00 |
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Waldir Leoncio
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aec2f40c2c
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Syntax fixes
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2021-03-31 10:31:14 +02:00 |
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Waldir Leoncio
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4d9ed9210f
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Added sorting of output on find()
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2021-03-31 10:27:45 +02:00 |
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Waldir Leoncio
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e1642f24e5
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Added list output to cell()
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2021-03-31 10:26:56 +02:00 |
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Waldir Leoncio
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d16de2ba7d
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Uncommented translated functions
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2021-03-30 08:34:41 +02:00 |
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Waldir Leoncio
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ef540baf7e
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Reformatting BAPS input
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2021-03-30 08:34:31 +02:00 |
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Waldir Leoncio
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c7720f33b4
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Fixed output formatting
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2021-03-30 08:23:37 +02:00 |
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Waldir Leoncio
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231e0ff501
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Fixed syntax
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2021-03-30 08:23:21 +02:00 |
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Waldir Leoncio
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f70277cd6a
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Fixed delimiter for BAPS-formatted file
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2021-03-30 08:22:24 +02:00 |
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Waldir Leoncio
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4a7eef74bc
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Refactoring
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2021-02-15 11:31:04 +01:00 |
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Waldir Leoncio
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f243ee0466
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Added missing {
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2021-02-15 10:16:33 +01:00 |
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Waldir Leoncio
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55cbadb471
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Replaced rowSums with colSums to match MATLAB sum
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2021-02-15 10:15:25 +01:00 |
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